Zinc Binding Site: 6N9F-4

PDB

6N9F (Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution)

Metals (4 Coordination)

16:102 (ZN)

Liganding Residues (C4)

16.13 (CYS)
16.16 (CYS)
16.40 (CYS)
16.43 (CYS)
57 equivalent sites.
1VY4-5
residues B6.13 (CYS), B6.16 (CYS), B6.40 (CYS), B6.43 (CYS)
1VY5-5
residues B6.13 (CYS), B6.16 (CYS), B6.40 (CYS), B6.43 (CYS)
1VY6-5
residues B6.13 (CYS), B6.16 (CYS), B6.40 (CYS), B6.43 (CYS)
1VY7-5
residues B6.13 (CYS), B6.16 (CYS), B6.40 (CYS), B6.43 (CYS)
4V8G-6
residues B6.13 (CYS), B6.16 (CYS), B6.40 (CYS), B6.43 (CYS)
4V8H-6
residues B6.13 (CYS), B6.16 (CYS), B6.40 (CYS), B6.43 (CYS)
4V8I-6
residues B6.13 (CYS), B6.16 (CYS), B6.40 (CYS), B6.43 (CYS)
4V95-6
residues B6.13 (CYS), B6.16 (CYS), B6.40 (CYS), B6.43 (CYS)
4V9R-5
residues B6.13 (CYS), B6.16 (CYS), B6.40 (CYS), B6.43 (CYS)
4V9S-5
residues B6.13 (CYS), B6.16 (CYS), B6.40 (CYS), B6.43 (CYS)
4W2E-3
residues 6.13 (CYS), 6.16 (CYS), 6.40 (CYS), 6.43 (CYS)
4W2F-5
residues B6.13 (CYS), B6.16 (CYS), B6.40 (CYS), B6.43 (CYS)
4W2G-5
residues B6.13 (CYS), B6.16 (CYS), B6.40 (CYS), B6.43 (CYS)
4W2H-5
residues B6.13 (CYS), B6.16 (CYS), B6.40 (CYS), B6.43 (CYS)
4W2I-5
residues B6.13 (CYS), B6.16 (CYS), B6.40 (CYS), B6.43 (CYS)
4WPO-4
residues A6.13 (CYS), A6.16 (CYS), A6.40 (CYS), A6.43 (CYS)
4WQF-4
residues A6.13 (CYS), A6.16 (CYS), A6.40 (CYS), A6.43 (CYS)
4WQU-4
residues A6.13 (CYS), A6.16 (CYS), A6.40 (CYS), A6.43 (CYS)
4WQY-4
residues A6.13 (CYS), A6.16 (CYS), A6.40 (CYS), A6.43 (CYS)
4Y4O-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
4Y4P-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
4Z3S-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
4Z8C-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
4ZER-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
5CZP-4
residues Y6.13 (CYS), Y6.16 (CYS), Y6.40 (CYS), Y6.43 (CYS)
5DFE-5
residues R6.13 (CYS), R6.16 (CYS), R6.40 (CYS), R6.43 (CYS)
5DOX-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
5DOY-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
5F8K-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
5FDU-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
5FDV-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
5HAU-4
residues 14.13 (CYS), 14.16 (CYS), 14.40 (CYS), 14.43 (CYS)
5HCP-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
5HCQ-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
5HCR-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
5HD1-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
5J30-4
residues R6.13 (CYS), R6.16 (CYS), R6.40 (CYS), R6.43 (CYS)
5J4B-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
5J4C-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
5J4D-3
residues DA.13 (CYS), DA.16 (CYS), DA.40 (CYS), DA.43 (CYS)
5J8B-4
residues 6.13 (CYS), 6.16 (CYS), 6.40 (CYS), 6.43 (CYS)
5UQ7-4
residues 6.13 (CYS), 6.16 (CYS), 6.40 (CYS), 6.43 (CYS)
5UQ8-4
residues 6.13 (CYS), 6.16 (CYS), 6.40 (CYS), 6.43 (CYS)
5V8I-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
5VP2-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
5W4K-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
5WIS-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
5WIT-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
6BZ6-5
residues R6.13 (CYS), R6.16 (CYS), R6.40 (CYS), R6.43 (CYS)
6BZ7-5
residues R6.13 (CYS), R6.16 (CYS), R6.40 (CYS), R6.43 (CYS)
6BZ8-5
residues R6.13 (CYS), R6.16 (CYS), R6.40 (CYS), R6.43 (CYS)
6CAE-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
6CFJ-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
6CFK-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
6CFL-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
6FKR-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
6N9E-4
residues 16.13 (CYS), 16.16 (CYS), 16.40 (CYS), 16.43 (CYS)
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Chain 16 Spacers: 2, 23, 2

masevrikllleCteCkrrnyateknkrntpnklelrkyCpwCrkhtvhrevki

PDB Information

Code: 6N9F
Classification: RIBOSOME
Resolution: 3.7 Å
R-factor: 0.2361
Keywords: D-amino acids, ribosome structure, peptidyl transferase center, expanded genetic code, ribosome engineering, RIBOSOME
Deposition Date: 3 December, 2018
Experimental Technique: X-RAY DIFFRACTION
Source Organism:
Expression System:
Biological Assembly: 1