Zinc Binding Site: 6N9F-1

PDB

6N9F (Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution)

Metals (4 Coordination)

1Y:202 (ZN)

Liganding Residues (C4)

1Y.76 (CYS)
1Y.79 (CYS)
1Y.99 (CYS)
1Y.102 (CYS)
59 equivalent sites.
1VY4-2
residues BY.76 (CYS), BY.79 (CYS), BY.99 (CYS), BY.102 (CYS)
1VY5-2
residues BY.76 (CYS), BY.79 (CYS), BY.99 (CYS), BY.102 (CYS)
1VY6-2
residues BY.76 (CYS), BY.79 (CYS), BY.99 (CYS), BY.102 (CYS)
1VY7-2
residues BY.76 (CYS), BY.79 (CYS), BY.99 (CYS), BY.102 (CYS)
4V8G-3
residues BY.76 (CYS), BY.79 (CYS), BY.99 (CYS), BY.102 (CYS)
4V8H-3
residues BY.76 (CYS), BY.79 (CYS), BY.99 (CYS), BY.102 (CYS)
4V8I-3
residues BY.76 (CYS), BY.79 (CYS), BY.99 (CYS), BY.102 (CYS)
4V95-3
residues BY.76 (CYS), BY.79 (CYS), BY.99 (CYS), BY.102 (CYS)
4V9R-2
residues BY.76 (CYS), BY.79 (CYS), BY.99 (CYS), BY.102 (CYS)
4V9S-2
residues BY.76 (CYS), BY.79 (CYS), BY.99 (CYS), BY.102 (CYS)
4W2E-1
residues Y.76 (CYS), Y.79 (CYS), Y.99 (CYS), Y.102 (CYS)
4W2F-2
residues BY.76 (CYS), BY.79 (CYS), BY.99 (CYS), BY.102 (CYS)
4W2G-2
residues BY.76 (CYS), BY.79 (CYS), BY.99 (CYS), BY.102 (CYS)
4W2H-2
residues BY.76 (CYS), BY.79 (CYS), BY.99 (CYS), BY.102 (CYS)
4W2I-2
residues BY.76 (CYS), BY.79 (CYS), BY.99 (CYS), BY.102 (CYS)
4WPO-1
residues AY.76 (CYS), AY.79 (CYS), AY.99 (CYS), AY.102 (CYS)
4WQ1-3
residues G8.76 (CYS), G8.79 (CYS), G8.99 (CYS), G8.102 (CYS)
4WQF-1
residues AY.76 (CYS), AY.79 (CYS), AY.99 (CYS), AY.102 (CYS)
4WQU-1
residues AY.76 (CYS), AY.79 (CYS), AY.99 (CYS), AY.102 (CYS)
4WQY-1
residues AY.76 (CYS), AY.79 (CYS), AY.99 (CYS), AY.102 (CYS)
4WR6-3
residues G8.76 (CYS), G8.79 (CYS), G8.99 (CYS), G8.102 (CYS)
4WZD-3
residues G8.76 (CYS), G8.79 (CYS), G8.99 (CYS), G8.102 (CYS)
4Y4O-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
4Y4P-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
4Z3S-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
4Z8C-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
4ZER-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
5CZP-1
residues YY.76 (CYS), YY.79 (CYS), YY.99 (CYS), YY.102 (CYS)
5DFE-2
residues RY.76 (CYS), RY.79 (CYS), RY.99 (CYS), RY.102 (CYS)
5DOX-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
5DOY-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
5F8K-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
5FDU-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
5FDV-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
5HAU-1
residues 1W.76 (CYS), 1W.79 (CYS), 1W.99 (CYS), 1W.102 (CYS)
5HCP-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
5HCQ-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
5HCR-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
5HD1-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
5J30-1
residues RY.76 (CYS), RY.79 (CYS), RY.99 (CYS), RY.102 (CYS)
5J4B-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
5J4C-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
5J4D-1
residues V.76 (CYS), V.79 (CYS), V.99 (CYS), V.102 (CYS)
5J8B-1
residues Y.76 (CYS), Y.79 (CYS), Y.99 (CYS), Y.102 (CYS)
5UQ7-1
residues Y.76 (CYS), Y.79 (CYS), Y.99 (CYS), Y.102 (CYS)
5UQ8-1
residues Y.76 (CYS), Y.79 (CYS), Y.99 (CYS), Y.102 (CYS)
5V8I-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
5VP2-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
5W4K-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
5WIS-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
5WIT-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
6BZ6-2
residues RY.76 (CYS), RY.79 (CYS), RY.99 (CYS), RY.102 (CYS)
6BZ8-2
residues RY.76 (CYS), RY.79 (CYS), RY.99 (CYS), RY.102 (CYS)
6CAE-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
6CFJ-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
6CFK-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
6CFL-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
6FKR-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
6N9E-1
residues 1Y.76 (CYS), 1Y.79 (CYS), 1Y.99 (CYS), 1Y.102 (CYS)
Download image

Chain 1Y Spacers: 2, 19, 2

mrvkmhvkkgdtvlvasgkykgrvgkvkevlpkkyavivegvnivkkavrvspkypqggfiekeaplhaskvrpiCpaCgkptrvrkkflengkkirvCakCggaldtee

PDB Information

Code: 6N9F
Classification: RIBOSOME
Resolution: 3.7 Å
R-factor: 0.2361
Keywords: D-amino acids, ribosome structure, peptidyl transferase center, expanded genetic code, ribosome engineering, RIBOSOME
Deposition Date: 3 December, 2018
Experimental Technique: X-RAY DIFFRACTION
Source Organism:
Expression System:
Biological Assembly: 1