Zinc Binding Site: 6N9E-5

PDB

6N9E (Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution)

Metals (4 Coordination)

19:501 (ZN)

Liganding Residues (C3H1)

19.11 (CYS)
19.14 (CYS)
19.27 (CYS)
19.32 (HIS)
71 equivalent sites.
1VY4-6
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
1VY5-6
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
1VY6-6
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
1VY7-6
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
4L47-3
residues R9.11 (CYS), R9.14 (CYS), R9.27 (CYS), R9.32 (HIS)
4L71-3
residues R9.11 (CYS), R9.14 (CYS), R9.27 (CYS), R9.32 (HIS)
4LFZ-3
residues R9.11 (CYS), R9.14 (CYS), R9.27 (CYS), R9.32 (HIS)
4LSK-3
residues R9.11 (CYS), R9.14 (CYS), R9.27 (CYS), R9.32 (HIS)
4V5F-3
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
4V5J-3
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
4V5L-4
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
4V5P-4
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
4V6A-3
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
4V7J-3
residues A9.11 (CYS), A9.14 (CYS), A9.27 (CYS), A9.32 (HIS)
4V7M-4
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
4V8G-7
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
4V8H-7
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
4V8I-7
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
4V8U-3
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
4V90-3
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
4V95-7
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
4V9R-6
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
4V9S-6
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
4W2E-4
residues 9.11 (CYS), 9.14 (CYS), 9.27 (CYS), 9.32 (HIS)
4W2F-6
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
4W2G-6
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
4W2H-6
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
4W2I-6
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
4WPO-5
residues A9.11 (CYS), A9.14 (CYS), A9.27 (CYS), A9.32 (HIS)
4WQF-5
residues A9.11 (CYS), A9.14 (CYS), A9.27 (CYS), A9.32 (HIS)
4WQU-5
residues A9.11 (CYS), A9.14 (CYS), A9.27 (CYS), A9.32 (HIS)
4WQY-5
residues A9.11 (CYS), A9.14 (CYS), A9.27 (CYS), A9.32 (HIS)
4Y4O-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
4Y4P-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
4Z3S-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
4Z8C-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
4ZER-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
5CZP-5
residues Y9.11 (CYS), Y9.14 (CYS), Y9.27 (CYS), Y9.32 (HIS)
5DFE-6
residues R9.11 (CYS), R9.14 (CYS), R9.27 (CYS), R9.32 (HIS)
5DOX-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
5DOY-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
5F8K-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
5FDU-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
5FDV-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
5HAU-5
residues 17.11 (CYS), 17.14 (CYS), 17.27 (CYS), 17.32 (HIS)
5HCP-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
5HCQ-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
5HCR-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
5HD1-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
5J30-5
residues R9.11 (CYS), R9.14 (CYS), R9.27 (CYS), R9.32 (HIS)
5J4B-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
5J4C-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
5J4D-4
residues GA.11 (CYS), GA.14 (CYS), GA.27 (CYS), GA.32 (HIS)
5J8B-5
residues 9.11 (CYS), 9.14 (CYS), 9.27 (CYS), 9.32 (HIS)
5UQ7-5
residues 9.11 (CYS), 9.14 (CYS), 9.27 (CYS), 9.32 (HIS)
5UQ8-5
residues 9.11 (CYS), 9.14 (CYS), 9.27 (CYS), 9.32 (HIS)
5V8I-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
5VP2-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
5W4K-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
5WIS-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
5WIT-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
6B4V-2
residues GA.11 (CYS), GA.14 (CYS), GA.27 (CYS), GA.32 (HIS)
6BZ6-6
residues R9.11 (CYS), R9.14 (CYS), R9.27 (CYS), R9.32 (HIS)
6BZ8-6
residues R9.11 (CYS), R9.14 (CYS), R9.27 (CYS), R9.32 (HIS)
6C5L-3
residues B9.11 (CYS), B9.14 (CYS), B9.27 (CYS), B9.32 (HIS)
6CAE-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
6CFJ-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
6CFK-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
6CFL-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
6FKR-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
6N9F-5
residues 19.11 (CYS), 19.14 (CYS), 19.27 (CYS), 19.32 (HIS)
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Chain 19 Spacers: 2, 12, 4

mkvrasvkriCdkCkvirrhgrvyviCenpkHkqrqg

PDB Information

Code: 6N9E
Classification: RIBOSOME
Resolution: 3.7 Å
R-factor: 0.2367
Keywords: D-amino acids, ribosome structure, peptidyl transferase center, expanded genetic code, ribosome engineering, RIBOSOME
Deposition Date: 3 December, 2018
Experimental Technique: X-RAY DIFFRACTION
Source Organism:
Expression System:
Biological Assembly: 1