Zinc Binding Site: 6N9E-3

PDB

6N9E (Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution)

Metals (4 Coordination)

15:102 (ZN)

Liganding Residues (C4)

15.33 (CYS)
15.36 (CYS)
15.46 (CYS)
15.49 (CYS)
64 equivalent sites.
1VY4-4
residues B5.33 (CYS), B5.36 (CYS), B5.46 (CYS), B5.49 (CYS)
1VY5-4
residues B5.33 (CYS), B5.36 (CYS), B5.46 (CYS), B5.49 (CYS)
1VY6-4
residues B5.33 (CYS), B5.36 (CYS), B5.46 (CYS), B5.49 (CYS)
1VY7-4
residues B5.33 (CYS), B5.36 (CYS), B5.46 (CYS), B5.49 (CYS)
4P6F-3
residues R5.33 (CYS), R5.36 (CYS), R5.46 (CYS), R5.49 (CYS)
4V6A-2
residues B5.33 (CYS), B5.36 (CYS), B5.46 (CYS), B5.49 (CYS)
4V7L-3
residues B5.33 (CYS), B5.36 (CYS), B5.46 (CYS), B5.49 (CYS)
4V7M-3
residues B5.33 (CYS), B5.36 (CYS), B5.46 (CYS), B5.49 (CYS)
4V8G-5
residues B5.33 (CYS), B5.36 (CYS), B5.46 (CYS), B5.49 (CYS)
4V8H-5
residues B5.33 (CYS), B5.36 (CYS), B5.46 (CYS), B5.49 (CYS)
4V8I-5
residues B5.33 (CYS), B5.36 (CYS), B5.46 (CYS), B5.49 (CYS)
4V95-5
residues B5.33 (CYS), B5.36 (CYS), B5.46 (CYS), B5.49 (CYS)
4V9R-4
residues B5.33 (CYS), B5.36 (CYS), B5.46 (CYS), B5.49 (CYS)
4V9S-4
residues B5.33 (CYS), B5.36 (CYS), B5.46 (CYS), B5.49 (CYS)
4W2E-2
residues 5.33 (CYS), 5.36 (CYS), 5.46 (CYS), 5.49 (CYS)
4W2F-4
residues B5.33 (CYS), B5.36 (CYS), B5.46 (CYS), B5.49 (CYS)
4W2G-4
residues B5.33 (CYS), B5.36 (CYS), B5.46 (CYS), B5.49 (CYS)
4W2H-4
residues B5.33 (CYS), B5.36 (CYS), B5.46 (CYS), B5.49 (CYS)
4W2I-4
residues B5.33 (CYS), B5.36 (CYS), B5.46 (CYS), B5.49 (CYS)
4WPO-3
residues A5.33 (CYS), A5.36 (CYS), A5.46 (CYS), A5.49 (CYS)
4WQF-3
residues A5.33 (CYS), A5.36 (CYS), A5.46 (CYS), A5.49 (CYS)
4WQU-3
residues A5.33 (CYS), A5.36 (CYS), A5.46 (CYS), A5.49 (CYS)
4WQY-3
residues A5.33 (CYS), A5.36 (CYS), A5.46 (CYS), A5.49 (CYS)
4Y4O-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
4Y4P-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
4Z3S-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
4Z8C-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
4ZER-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
5CZP-3
residues Y5.33 (CYS), Y5.36 (CYS), Y5.46 (CYS), Y5.49 (CYS)
5DFE-4
residues R5.33 (CYS), R5.36 (CYS), R5.46 (CYS), R5.49 (CYS)
5DOX-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
5DOY-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
5F8K-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
5FDU-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
5FDV-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
5HAU-3
residues 13.33 (CYS), 13.36 (CYS), 13.46 (CYS), 13.49 (CYS)
5HCP-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
5HCQ-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
5HCR-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
5HD1-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
5J30-3
residues R5.33 (CYS), R5.36 (CYS), R5.46 (CYS), R5.49 (CYS)
5J4B-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
5J4C-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
5J4D-2
residues CA.33 (CYS), CA.36 (CYS), CA.46 (CYS), CA.49 (CYS)
5J8B-3
residues 5.33 (CYS), 5.36 (CYS), 5.46 (CYS), 5.49 (CYS)
5UQ7-3
residues 5.33 (CYS), 5.36 (CYS), 5.46 (CYS), 5.49 (CYS)
5UQ8-3
residues 5.33 (CYS), 5.36 (CYS), 5.46 (CYS), 5.49 (CYS)
5V8I-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
5VP2-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
5W4K-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
5WIS-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
5WIT-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
6B4V-1
residues CA.33 (CYS), CA.36 (CYS), CA.46 (CYS), CA.49 (CYS)
6BOH-1
residues CA.33 (CYS), CA.36 (CYS), CA.46 (CYS), CA.49 (CYS)
6BUW-3
residues R5.33 (CYS), R5.36 (CYS), R5.46 (CYS), R5.49 (CYS)
6BZ6-4
residues R5.33 (CYS), R5.36 (CYS), R5.46 (CYS), R5.49 (CYS)
6BZ7-4
residues R5.33 (CYS), R5.36 (CYS), R5.46 (CYS), R5.49 (CYS)
6BZ8-4
residues R5.33 (CYS), R5.36 (CYS), R5.46 (CYS), R5.49 (CYS)
6CAE-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
6CFJ-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
6CFK-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
6CFL-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
6FKR-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
6N9F-3
residues 15.33 (CYS), 15.36 (CYS), 15.46 (CYS), 15.49 (CYS)
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Chain 15 Spacers: 2, 9, 2

makhpvpkkktskarrdarrshhaltpptlvpCpeCkamkpphtvCpeCgyyagrkvlev

PDB Information

Code: 6N9E
Classification: RIBOSOME
Resolution: 3.7 Å
R-factor: 0.2367
Keywords: D-amino acids, ribosome structure, peptidyl transferase center, expanded genetic code, ribosome engineering, RIBOSOME
Deposition Date: 3 December, 2018
Experimental Technique: X-RAY DIFFRACTION
Source Organism:
Expression System:
Biological Assembly: 1