Zinc Binding Site: 6N9E-2

PDB

6N9E (Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution)

Metals (4 Coordination)

14:501 (ZN)

Liganding Residues (C4)

14.16 (CYS)
14.18 (CYS)
14.36 (CYS)
14.39 (CYS)
52 equivalent sites.
1VY4-3
residues B4.16 (CYS), B4.18 (CYS), B4.36 (CYS), B4.39 (CYS)
1VY5-3
residues B4.16 (CYS), B4.18 (CYS), B4.36 (CYS), B4.39 (CYS)
1VY6-3
residues B4.16 (CYS), B4.18 (CYS), B4.36 (CYS), B4.39 (CYS)
1VY7-3
residues B4.16 (CYS), B4.18 (CYS), B4.36 (CYS), B4.39 (CYS)
4V5Q-3
residues B4.16 (CYS), B4.18 (CYS), B4.36 (CYS), B4.39 (CYS)
4V8G-4
residues B4.16 (CYS), B4.18 (CYS), B4.36 (CYS), B4.39 (CYS)
4V8H-4
residues B4.16 (CYS), B4.18 (CYS), B4.36 (CYS), B4.39 (CYS)
4V8I-4
residues B4.16 (CYS), B4.18 (CYS), B4.36 (CYS), B4.39 (CYS)
4V95-4
residues B4.16 (CYS), B4.18 (CYS), B4.36 (CYS), B4.39 (CYS)
4V9R-3
residues B4.16 (CYS), B4.18 (CYS), B4.36 (CYS), B4.39 (CYS)
4V9S-3
residues B4.16 (CYS), B4.18 (CYS), B4.36 (CYS), B4.39 (CYS)
4W2F-3
residues B4.16 (CYS), B4.18 (CYS), B4.36 (CYS), B4.39 (CYS)
4W2G-3
residues B4.16 (CYS), B4.18 (CYS), B4.36 (CYS), B4.39 (CYS)
4W2H-3
residues B4.16 (CYS), B4.18 (CYS), B4.36 (CYS), B4.39 (CYS)
4W2I-3
residues B4.16 (CYS), B4.18 (CYS), B4.36 (CYS), B4.39 (CYS)
4Y4O-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
4Y4P-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
4Z3S-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
4Z8C-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
4ZER-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
5CZP-2
residues Y4.16 (CYS), Y4.18 (CYS), Y4.36 (CYS), Y4.39 (CYS)
5DFE-3
residues R4.16 (CYS), R4.18 (CYS), R4.36 (CYS), R4.39 (CYS)
5DOX-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
5DOY-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
5F8K-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
5FDU-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
5FDV-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
5HAU-2
residues 12.16 (CYS), 12.18 (CYS), 12.36 (CYS), 12.39 (CYS)
5HCP-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
5HCQ-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
5HCR-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
5HD1-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
5J30-2
residues R4.16 (CYS), R4.18 (CYS), R4.36 (CYS), R4.39 (CYS)
5J4B-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
5J4C-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
5J8B-2
residues 4.16 (CYS), 4.18 (CYS), 4.36 (CYS), 4.39 (CYS)
5UQ7-2
residues 4.16 (CYS), 4.18 (CYS), 4.36 (CYS), 4.39 (CYS)
5UQ8-2
residues 4.16 (CYS), 4.18 (CYS), 4.36 (CYS), 4.39 (CYS)
5V8I-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
5VP2-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
5W4K-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
5WIS-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
5WIT-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
6BZ6-3
residues R4.16 (CYS), R4.18 (CYS), R4.36 (CYS), R4.39 (CYS)
6BZ7-3
residues R4.16 (CYS), R4.18 (CYS), R4.36 (CYS), R4.39 (CYS)
6BZ8-3
residues R4.16 (CYS), R4.18 (CYS), R4.36 (CYS), R4.39 (CYS)
6CAE-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
6CFJ-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
6CFK-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
6CFL-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
6FKR-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
6N9F-2
residues 14.16 (CYS), 14.18 (CYS), 14.36 (CYS), 14.39 (CYS)
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Chain 14 Spacers: 1, 17, 2

mkegihpklvpariiCgCgnvietystkpeiyvevCskChpfytgqqrfvdtegrverfqrrygdsyrkgr

PDB Information

Code: 6N9E
Classification: RIBOSOME
Resolution: 3.7 Å
R-factor: 0.2367
Keywords: D-amino acids, ribosome structure, peptidyl transferase center, expanded genetic code, ribosome engineering, RIBOSOME
Deposition Date: 3 December, 2018
Experimental Technique: X-RAY DIFFRACTION
Source Organism:
Expression System:
Biological Assembly: 1