Zinc Binding Site: 6N62-1

PDB

6N62 (Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA)

Metals (4 Coordination)

D:1502 (ZN)

Liganding Residues (C4)

D.70 (CYS)
D.72 (CYS)
D.85 (CYS)
D.88 (CYS)
75 equivalent sites.
4JK1-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
4JK2-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
4JKR-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
4KMU-1
residues I.70 (CYS), I.72 (CYS), I.85 (CYS), I.88 (CYS)
4KMU-2
residues I.814 (CYS), I.888 (CYS), I.895 (CYS), I.898 (CYS)
4KN4-1
residues I.70 (CYS), I.72 (CYS), I.85 (CYS), I.88 (CYS)
4KN4-2
residues I.814 (CYS), I.888 (CYS), I.895 (CYS), I.898 (CYS)
4KN7-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
4LJZ-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
4LK0-2
residues J.814 (CYS), J.888 (CYS), J.895 (CYS), J.898 (CYS)
4LK1-2
residues J.814 (CYS), J.888 (CYS), J.895 (CYS), J.898 (CYS)
4LLG-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
4LLG-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
4MEX-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
4MEX-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
4MEY-1
residues J.70 (CYS), J.72 (CYS), J.85 (CYS), J.88 (CYS)
4MEY-2
residues J.814 (CYS), J.888 (CYS), J.895 (CYS), J.898 (CYS)
4S20-1
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
4XSX-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
4XSX-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
4XSY-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
4XSZ-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
4YFK-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
4YFN-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
4YFN-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
4YFX-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
4YG2-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
4YG2-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
4YLO-1
residues J.70 (CYS), J.72 (CYS), J.85 (CYS), J.88 (CYS)
4YLP-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
4ZH2-1
residues J.70 (CYS), J.72 (CYS), J.85 (CYS), J.88 (CYS)
4ZH2-2
residues J.814 (CYS), J.888 (CYS), J.895 (CYS), J.898 (CYS)
4ZH3-2
residues J.814 (CYS), J.888 (CYS), J.895 (CYS), J.898 (CYS)
4ZH4-2
residues J.814 (CYS), J.888 (CYS), J.895 (CYS), J.898 (CYS)
5IPL-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
5IPL-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
5IPM-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
5IPM-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
5IPN-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
5IPN-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
5UAC-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
5UAC-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
5UAG-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
5UAH-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
5UAH-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
5UAJ-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
5UAL-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
5UAQ-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
5UAQ-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
5UI8-1
residues J.70 (CYS), J.72 (CYS), J.85 (CYS), J.88 (CYS)
5VSW-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
5VSW-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
5VT0-1
residues J.70 (CYS), J.72 (CYS), J.85 (CYS), J.88 (CYS)
5W1S-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
5W1S-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
5W1T-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
5W1T-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
6ALF-2
residues J.814 (CYS), J.888 (CYS), J.895 (CYS), J.898 (CYS)
6ALG-1
residues J.70 (CYS), J.72 (CYS), J.85 (CYS), J.88 (CYS)
6ALG-2
residues J.814 (CYS), J.888 (CYS), J.895 (CYS), J.898 (CYS)
6ASX-2
residues J.814 (CYS), J.888 (CYS), J.895 (CYS), J.898 (CYS)
6B6H-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
6BJS-2
residues J.814 (CYS), J.888 (CYS), J.895 (CYS), J.898 (CYS)
6BYU-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
6BYU-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
6C6S-2
residues J.814 (CYS), J.888 (CYS), J.895 (CYS), J.898 (CYS)
6C6T-2
residues J.814 (CYS), J.888 (CYS), J.895 (CYS), J.898 (CYS)
6C6U-2
residues J.814 (CYS), J.888 (CYS), J.895 (CYS), J.898 (CYS)
6C9Y-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
6C9Y-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
6CUX-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
6N60-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
6N60-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
6N61-1
residues D.70 (CYS), D.72 (CYS), D.85 (CYS), D.88 (CYS)
6N62-2
residues D.814 (CYS), D.888 (CYS), D.895 (CYS), D.898 (CYS)
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Chain D Spacers: 1, 12, 2

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PDB Information

Code: 6N62
Classification: TRANSFERASE/DNA
Resolution: 3.8 Å
R-factor: 0.2856
Keywords: Complex, RNA polymerase, TRANSFERASE-DNA complex
Deposition Date: 24 November, 2018
Experimental Technique: X-RAY DIFFRACTION
Source Organism:
Expression System:
Biological Assembly: 1